Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| had family phosphatase | PFL_RS29905 | Not Available | + | 6711709 - 6712365 | 24860.4 |
| duf2269 domain-containing protein | PFL_RS29910 | Not Available | - | 6712416 - 6712883 | 17424.8 |
| sdr family oxidoreductase | PFL_RS29915 | Not Available | - | 6712880 - 6714136 | 44964.9 |
| duf2269 family protein | PFL_RS29920 | Not Available | - | 6714152 - 6714580 | 15566.8 |
| threonine ammonia-lyase, biosynthetic | PFL_RS29925 | Not Available | - | 6714621 - 6716135 | 55003.8 |
| ribose-5-phosphate isomerase rpia | PFL_RS29930 | Not Available | + | 6716338 - 6717009 | 23347.2 |
| sdia-regulated domain-containing protein | PFL_RS29935 | Not Available | - | 6717079 - 6717984 | 33908.6 |
| sdia-regulated domain-containing protein | PFL_RS29940 | Not Available | - | 6718086 - 6719012 | 34471.4 |
| fumarylacetoacetate hydrolase family protein | PFL_RS29945 | Not Available | - | 6719178 - 6719843 | 23584.6 |
| fad-binding oxidoreductase | PFL_RS29950 | Not Available | - | 6719887 - 6721281 | 51008.9 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


