Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate-binding domain-containing protein | PFL_RS29455 | Not Available | + | 6619015 - 6619932 | 34083.4 |
| malonate transporter subunit madm | PFL_RS29460 | Not Available | - | 6620042 - 6620806 | 25766.3 |
| malonate transporter subunit madl | PFL_RS29465 | Not Available | - | 6620808 - 6621224 | 14011.9 |
| malonate decarboxylase subunit epsilon | PFL_RS29470 | Not Available | - | 6621292 - 6622227 | 32787.8 |
| malonate decarboxylase holo-acp synthase | PFL_RS29475 | Not Available | - | 6622224 - 6622850 | 22229.8 |
| biotin-independent malonate decarboxylase subunit gamma | PFL_RS29480 | Not Available | - | 6622847 - 6623650 | 28482.2 |
| biotin-independent malonate decarboxylase subunit beta | PFL_RS29485 | Not Available | - | 6623647 - 6624498 | 30201.2 |
| malonate decarboxylase subunit delta | PFL_RS29490 | Not Available | - | 6624491 - 6624790 | 10683.7 |
| triphosphoribosyl-dephospho-coa synthase | PFL_RS29495 | Not Available | - | 6624790 - 6625665 | 30423.7 |
| malonate decarboxylase subunit alpha | PFL_RS29500 | Not Available | - | 6625665 - 6627341 | 61417.1 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


