Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mlic family protein | PFL_RS29305 | Not Available | - | 6588712 - 6589041 | 11952.3 |
| hypothetical protein | PFL_RS29310 | Not Available | - | 6589102 - 6589323 | 7698.23 |
| phosphoglycerate kinase | PFL_RS29315 | Not Available | - | 6589356 - 6590519 | 40189.5 |
| erythrose-4-phosphate dehydrogenase | PFL_RS29320 | Not Available | - | 6590537 - 6591616 | 39061.2 |
| transketolase | PFL_RS29325 | Not Available | - | 6591770 - 6593767 | 72295.3 |
| metalloregulator arsr/smtb family transcription factor | PFL_RS29330 | Not Available | + | 6594026 - 6595021 | 35895.1 |
| methionine adenosyltransferase | PFL_RS29335 | Not Available | + | 6595040 - 6596230 | 42531.5 |
| nad-dependent dna ligase ligb | PFL_RS29340 | Not Available | + | 6596455 - 6598125 | 62424.6 |
| duf1090 domain-containing protein | PFL_RS29345 | Not Available | + | 6598239 - 6598634 | 14497.4 |
| cytochrome c | PFL_RS29350 | Not Available | - | 6598674 - 6599123 | 16418.7 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


