Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| choline abc transporter substrate-binding protein | PFL_RS29205 | Not Available | + | 6562448 - 6563404 | 34694.7 |
| choline abc transporter permease subunit | PFL_RS29210 | Not Available | + | 6563475 - 6564320 | 30224.2 |
| choline abc transporter atp-binding protein | PFL_RS29215 | Not Available | + | 6564317 - 6565495 | 43729.4 |
| bcct family transporter | PFL_RS29220 | Not Available | - | 6565662 - 6567614 | 71720.3 |
| transcriptional regulator beti | PFL_RS29225 | Not Available | + | 6568101 - 6568694 | 22062.8 |
| betaine-aldehyde dehydrogenase | PFL_RS29230 | Not Available | + | 6568803 - 6570275 | 53159.2 |
| choline dehydrogenase | PFL_RS29235 | Not Available | + | 6570411 - 6572114 | 62707.4 |
| tldd/pmba family protein | PFL_RS29240 | Not Available | + | 6572344 - 6573786 | 52808.1 |
| tldd/pmba family protein | PFL_RS29245 | Not Available | + | 6573786 - 6575123 | 48593.2 |
| multidrug transporter subunit mdtd | PFL_RS29250 | Not Available | + | 6575160 - 6576590 | 50750.8 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


