Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| choline abc transporter substrate-binding protein | PFL_RS29155 | Not Available | + | 6552544 - 6553488 | 34307.1 |
| 3-keto-5-aminohexanoate cleavage protein | PFL_RS29160 | Not Available | + | 6553577 - 6554464 | 31502.3 |
| l-carnitine dehydrogenase | PFL_RS29165 | Not Available | + | 6554624 - 6555589 | 34762.7 |
| thioesterase family protein | PFL_RS29170 | Not Available | + | 6555698 - 6556174 | 17953.4 |
| gamma-butyrobetaine dioxygenase | PFL_RS29175 | Not Available | + | 6556199 - 6557359 | 44175.5 |
| duf4952 domain-containing protein | PFL_RS29180 | Not Available | - | 6557614 - 6558042 | 16343.8 |
| hypothetical protein | PFL_RS29185 | Not Available | + | 6558355 - 6558618 | 9395.45 |
| aminoglycoside 6'-n-acetyltransferase | PFL_RS29190 | Not Available | + | 6558681 - 6559127 | 16467.2 |
| glxa family transcriptional regulator | PFL_RS29195 | Not Available | - | 6559128 - 6560231 | 40971.6 |
| l-serine ammonia-lyase | PFL_RS29200 | Not Available | - | 6560644 - 6562020 | 49069.2 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


