Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytosine permease | PFL_RS29050 | Not Available | + | 6531412 - 6532857 | 51998.1 |
| nitrilase-related carbon-nitrogen hydrolase | PFL_RS29055 | Not Available | + | 6532854 - 6533681 | 30239.2 |
| glycine-betaine demethylase subunit gbcb | PFL_RS29060 | Not Available | - | 6533760 - 6534860 | 40462.6 |
| glycine-betaine demethylase subunit gbca | PFL_RS29065 | Not Available | + | 6535152 - 6536447 | 48708.3 |
| phosphomannomutase/phosphoglucomutase | PFL_RS32370 | Not Available | - | 6536843 - 6537172 | 12527.8 |
| electron transfer flavoprotein subunit beta | PFL_RS29080 | Not Available | - | 6538339 - 6539109 | 26869.7 |
| electron transfer flavoprotein subunit alpha/fixb family protein | PFL_RS29085 | Not Available | - | 6539119 - 6540339 | 43051.5 |
| dimethylglycine demethylation protein dgcb | PFL_RS29090 | Not Available | - | 6540339 - 6542288 | 70333.8 |
| dimethylglycine demethylation protein dgca | PFL_RS29095 | Not Available | - | 6542403 - 6544463 | 75849.1 |
| 4-vinyl reductase | PFL_RS29100 | Not Available | - | 6544479 - 6545009 | 19737.6 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


