Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PFL_RS29000 | Not Available | + | 6519134 - 6519718 | 22023.5 |
| formaldehyde dehydrogenase, glutathione-independent | PFL_RS29005 | Not Available | - | 6519911 - 6521110 | 42069.6 |
| formyltetrahydrofolate deformylase | PFL_RS29010 | Not Available | - | 6521281 - 6522138 | 32361.7 |
| sarcosine oxidase subunit gamma | PFL_RS29015 | Not Available | - | 6522295 - 6522927 | 22843.3 |
| sarcosine oxidase subunit alpha | PFL_RS29020 | Not Available | - | 6522981 - 6525998 | 109568.0 |
| sarcosine oxidase subunit delta | PFL_RS29025 | Not Available | - | 6525995 - 6526297 | 11567.5 |
| sarcosine oxidase subunit beta family protein | PFL_RS29030 | Not Available | - | 6526312 - 6527562 | 45267.0 |
| serine hydroxymethyltransferase | PFL_RS29035 | Not Available | - | 6527586 - 6528839 | 44809.4 |
| trax family protein | PFL_RS29040 | Not Available | - | 6529151 - 6529891 | 27632.0 |
| low specificity l-threonine aldolase | PFL_RS29045 | Not Available | + | 6529992 - 6531032 | 38040.0 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


