Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pyrroloquinoline quinone precursor peptide pqqa | PFL_RS32355 | Not Available | + | 6467318 - 6467392 | 2871.46 |
| pyrroloquinoline quinone biosynthesis protein pqqb | PFL_RS28760 | Not Available | + | 6467497 - 6468408 | 33209.8 |
| pyrroloquinoline-quinone synthase pqqc | PFL_RS28765 | Not Available | + | 6468501 - 6469253 | 28994.3 |
| pyrroloquinoline quinone biosynthesis peptide chaperone pqqd | PFL_RS28770 | Not Available | + | 6469250 - 6469525 | 10318.3 |
| pyrroloquinoline quinone biosynthesis protein pqqe | PFL_RS28775 | Not Available | + | 6469497 - 6470666 | 43755.4 |
| s9 family peptidase | PFL_RS28780 | Not Available | + | 6470632 - 6472464 | 67482.0 |
| yqae/pmp3 family membrane protein | PFL_RS32360 | Not Available | - | 6472501 - 6472659 | 5741.49 |
| type 1 glutamine amidotransferase | PFL_RS28790 | Not Available | - | 6472957 - 6473682 | 26360.8 |
| aspartate aminotransferase family protein | PFL_RS28795 | Not Available | - | 6473682 - 6474965 | 45150.1 |
| mosc domain-containing protein | PFL_RS28800 | Not Available | - | 6474962 - 6475660 | 26493.6 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


