Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod | PFL_RS28710 | Not Available | + | 6449991 - 6451838 | 69440.9 |
| eal domain-containing protein | PFL_RS28715 | Not Available | + | 6451955 - 6455698 | 140216.0 |
| Trna-met | Not Available | Not Available | + | 6455714 - 6455790 | Not Available |
| hypothetical protein | PFL_RS32990 | Not Available | - | 6456763 - 6457800 | 37979.4 |
| hypothetical protein | PFL_RS28730 | Not Available | - | 6458322 - 6458627 | 11638.9 |
| glucose/quinate/shikimate family membrane-bound pqq-dependent dehydrogenase | PFL_RS28735 | Not Available | - | 6458848 - 6461223 | 84745.6 |
| lrp/asnc family transcriptional regulator | PFL_RS28740 | Not Available | + | 6461432 - 6461893 | 16745.3 |
| nad(p)/fad-dependent oxidoreductase | PFL_RS28745 | Not Available | + | 6462062 - 6463744 | 62337.2 |
| carbon-nitrogen hydrolase family protein | PFL_RS28750 | Not Available | + | 6463856 - 6464650 | 29142.7 |
| pyrroloquinoline quinone biosynthesis protein pqqf | PFL_RS28755 | Not Available | + | 6464699 - 6467161 | 89884.4 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


