Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | + | 6383004 - 6385895 | Not Available |
| Trna-ala | Not Available | Not Available | + | 6386129 - 6386204 | Not Available |
| Trna-ile | Not Available | Not Available | + | 6386215 - 6386291 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | + | 6386415 - 6387953 | Not Available |
| tyrosine--trna ligase | PFL_RS28430 | Not Available | - | 6388506 - 6389705 | 44160.3 |
| peptidoglycan dd-metalloendopeptidase family protein | PFL_RS28435 | Not Available | + | 6389915 - 6391336 | 51003.7 |
| anhydro-n-acetylmuramic acid kinase | PFL_RS28440 | Not Available | + | 6391340 - 6392431 | 38531.1 |
| iron-sulfur cluster insertion protein erpa | PFL_RS28445 | Not Available | - | 6392502 - 6392852 | 12534.6 |
| n-acetyl-gamma-glutamyl-phosphate reductase | PFL_RS28450 | Not Available | - | 6393021 - 6394055 | 36788.4 |
| protoporphyrinogen oxidase hemj | PFL_RS28455 | Not Available | + | 6394191 - 6394622 | 16715.1 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


