Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | PFL_RS27965 | Not Available | - | 6299424 - 6300167 | 28413.9 |
| phosphatidylglycerophosphatase a | PFL_RS27970 | Not Available | - | 6300178 - 6300681 | 19359.9 |
| thiamine-phosphate kinase | PFL_RS27975 | Not Available | - | 6300678 - 6301643 | 32533.2 |
| transcription antitermination factor nusb | PFL_RS27980 | Not Available | - | 6301662 - 6302162 | 18809.4 |
| 6,7-dimethyl-8-ribityllumazine synthase | PFL_RS27985 | Not Available | - | 6302159 - 6302635 | 16405.0 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | PFL_RS27990 | Not Available | - | 6302727 - 6303818 | 39572.9 |
| riboflavin synthase | PFL_RS27995 | Not Available | - | 6303835 - 6304497 | 23462.1 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | PFL_RS28000 | Not Available | - | 6304545 - 6305678 | 39987.3 |
| transcriptional regulator nrdr | PFL_RS28005 | Not Available | - | 6305675 - 6306139 | 17890.6 |
| hypothetical protein | PFL_RS28010 | Not Available | + | 6306269 - 6306727 | 16096.4 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


