Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf1175 domain-containing protein | PFL_RS27915 | Not Available | - | 6288690 - 6289349 | 24412.1 |
| duf2138 domain-containing protein | PFL_RS27920 | Not Available | - | 6289334 - 6291046 | 62351.8 |
| yfap family protein | PFL_RS27925 | Not Available | - | 6291084 - 6291875 | 29087.5 |
| exodeoxyribonuclease vii small subunit | PFL_RS27930 | Not Available | + | 6292243 - 6292485 | 8875.35 |
| (2e,6e)-farnesyl diphosphate synthase | PFL_RS27935 | Not Available | + | 6292482 - 6293369 | 31398.6 |
| 1-deoxy-d-xylulose-5-phosphate synthase | PFL_RS27940 | Not Available | + | 6293482 - 6295383 | 68450.6 |
| tonb-dependent siderophore receptor | PFL_RS27945 | Not Available | + | 6295504 - 6297396 | 71256.6 |
| cobalamin-binding protein | PFL_RS27950 | Not Available | - | 6297465 - 6298262 | 28583.0 |
| hypothetical protein | PFL_RS27955 | Not Available | - | 6298262 - 6298681 | 15264.2 |
| gtp cyclohydrolase ii | PFL_RS27960 | Not Available | - | 6298678 - 6299295 | 22416.1 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


