Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf493 domain-containing protein | PFL_RS27620 | Not Available | - | 6217750 - 6218025 | 10075.1 |
| d-alanyl-d-alanine carboxypeptidase family protein | PFL_RS27625 | Not Available | - | 6218107 - 6219264 | 42242.8 |
| septal ring lytic transglycosylase rlpa family protein | PFL_RS27630 | Not Available | - | 6219451 - 6220449 | 35763.5 |
| lytic murein transglycosylase b | PFL_RS27635 | Not Available | - | 6220449 - 6221459 | 37680.7 |
| rod shape-determining protein roda | PFL_RS27640 | Not Available | - | 6221477 - 6222580 | 40126.8 |
| penicillin-binding protein 2 | PFL_RS27645 | Not Available | - | 6222612 - 6224507 | 70338.5 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | PFL_RS27650 | Not Available | - | 6224520 - 6224987 | 17747.6 |
| phosphomannomutase/phosphoglucomutase | PFL_RS27655 | Not Available | - | 6224997 - 6225404 | 15153.0 |
| nicotinate-nucleotide adenylyltransferase | PFL_RS27660 | Not Available | - | 6225480 - 6226124 | 23526.4 |
| glutamate-5-semialdehyde dehydrogenase | PFL_RS27665 | Not Available | - | 6226124 - 6227389 | 45395.5 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


