Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ydcf family protein | PFL_RS27570 | Not Available | - | 6207423 - 6208184 | 28048.2 |
| hypothetical protein | PFL_RS27575 | Not Available | - | 6208312 - 6208632 | 12377.1 |
| leucine--trna ligase | PFL_RS27580 | Not Available | + | 6208893 - 6211499 | 96959.4 |
| lps assembly lipoprotein lpte | PFL_RS27585 | Not Available | + | 6211589 - 6212194 | 22294.7 |
| dna polymerase iii subunit delta | PFL_RS27590 | Not Available | + | 6212235 - 6213272 | 37334.1 |
| alternative ribosome rescue factor arfa | PFL_RS27595 | Not Available | + | 6213385 - 6213546 | 5997.14 |
| lytic murein transglycosylase | PFL_RS27600 | Not Available | + | 6213610 - 6214932 | 48088.0 |
| ld-carboxypeptidase | PFL_RS27605 | Not Available | - | 6214980 - 6215927 | 33807.1 |
| lipoyl synthase | PFL_RS27610 | Not Available | - | 6216079 - 6217101 | 38110.2 |
| lipoyl(octanoyl) transferase lipb | PFL_RS27615 | Not Available | - | 6217103 - 6217750 | 23522.4 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


