Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | PFL_RS27520 | Not Available | + | 6197818 - 6198615 | 28358.0 |
| thiamine phosphate synthase | PFL_RS27525 | Not Available | + | 6198634 - 6199257 | 22079.6 |
| glutamate-1-semialdehyde 2,1-aminomutase | PFL_RS27530 | Not Available | + | 6199275 - 6200558 | 45182.4 |
| tetratricopeptide repeat protein | PFL_RS27535 | Not Available | + | 6200777 - 6201331 | 19876.5 |
| duf1820 family protein | PFL_RS27540 | Not Available | - | 6201409 - 6201735 | 12513.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | PFL_RS27545 | Not Available | + | 6201870 - 6203198 | 49544.1 |
| phoh family protein | PFL_RS27550 | Not Available | + | 6203312 - 6204331 | 38103.1 |
| rrna maturation rnase ybey | PFL_RS27555 | Not Available | + | 6204324 - 6204782 | 17316.1 |
| hlyc/corc family transporter | PFL_RS27560 | Not Available | + | 6204825 - 6205664 | 31438.5 |
| apolipoprotein n-acyltransferase | PFL_RS27565 | Not Available | + | 6205855 - 6207378 | 55817.4 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


