Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein-export chaperone secb | PFL_RS01910 | Not Available | + | 426107 - 426586 | 17622.8 |
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | PFL_RS01915 | Not Available | - | 426682 - 427137 | 16962.3 |
| hypothetical protein | PFL_RS01920 | Not Available | + | 427136 - 427576 | 16438.9 |
| nitrogen regulation protein nr(i) | PFL_RS01925 | Not Available | - | 428342 - 429778 | 53115.4 |
| nitrogen regulation protein nr(ii) | PFL_RS01930 | Not Available | - | 429775 - 430860 | 40010.5 |
| bifunctional transcriptional activator/dna repair enzyme adaa | PFL_RS01935 | Not Available | + | 431232 - 432326 | 40152.2 |
| mfs transporter | PFL_RS01940 | Not Available | - | 432309 - 433721 | 50201.7 |
| lysr family transcriptional regulator | PFL_RS01945 | Not Available | - | 433879 - 434778 | 32735.5 |
| acyl-coa dehydrogenase family protein | PFL_RS01950 | Not Available | + | 434889 - 436610 | 63249.9 |
| caib/baif coa-transferase family protein | PFL_RS01955 | Not Available | + | 436646 - 437833 | 41697.0 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


