Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pca operon transcription factor pcaq | PFL_RS27375 | Not Available | - | 6166827 - 6167756 | 33446.6 |
| neutral zinc metallopeptidase | PFL_RS27380 | Not Available | + | 6167896 - 6168792 | 32147.8 |
| hypothetical protein | PFL_RS27385 | Not Available | + | 6168793 - 6169764 | 35268.1 |
| had family hydrolase | PFL_RS27390 | Not Available | - | 6169837 - 6170430 | 21541.6 |
| acyl-coa thioesterase ii | PFL_RS27395 | Not Available | - | 6170427 - 6171296 | 32501.5 |
| gnat family n-acetyltransferase | PFL_RS27400 | Not Available | - | 6171398 - 6171967 | 21390.6 |
| histone deacetylase | PFL_RS27405 | Not Available | + | 6172043 - 6172963 | 34125.5 |
| phosphomannomutase/phosphoglucomutase | PFL_RS33345 | Not Available | + | 6173261 - 6173410 | 5936.28 |
| udp-glucose 4-epimerase gale | PFL_RS27410 | Not Available | + | 6173683 - 6174705 | 37082.1 |
| tigr03862 family flavoprotein | PFL_RS27415 | Not Available | + | 6174794 - 6176026 | 43785.3 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


