Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroshikimate dehydratase quic | PFL_RS27325 | Not Available | - | 6154768 - 6156678 | 70353.6 |
| mfs transporter | PFL_RS27330 | Not Available | + | 6157216 - 6158550 | 48976.9 |
| methyl-accepting chemotaxis protein | PFL_RS27335 | Not Available | + | 6158642 - 6160264 | 58576.7 |
| dmt family transporter | PFL_RS27340 | Not Available | - | 6160271 - 6161149 | 31678.9 |
| sugar phosphate isomerase/epimerase | PFL_RS27345 | Not Available | - | 6161250 - 6162065 | 29879.9 |
| gfo/idh/moca family protein | PFL_RS27350 | Not Available | - | 6162073 - 6163125 | 37941.5 |
| iclr family transcriptional regulator | PFL_RS27355 | Not Available | - | 6163362 - 6164138 | 28079.6 |
| aldo/keto reductase | PFL_RS27360 | Not Available | + | 6164459 - 6165307 | 31694.0 |
| protocatechuate 3,4-dioxygenase subunit alpha | PFL_RS27365 | Not Available | - | 6165388 - 6165993 | 22290.4 |
| protocatechuate 3,4-dioxygenase subunit beta | PFL_RS27370 | Not Available | - | 6166004 - 6166723 | 26851.9 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


