Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family type i secretion periplasmic adaptor subunit | PFL_RS27275 | Not Available | - | 6143524 - 6144873 | 49364.2 |
| type i secretion system permease/atpase | PFL_RS27280 | Not Available | - | 6144870 - 6146666 | 64053.6 |
| heme acquisition protein hasa | PFL_RS27285 | Not Available | - | 6146885 - 6147502 | 20985.0 |
| tonb-dependent receptor | PFL_RS27290 | Not Available | - | 6147586 - 6150291 | 97985.1 |
| fecr family protein | PFL_RS27295 | Not Available | - | 6150423 - 6151436 | 36703.0 |
| rna polymerase sigma factor | PFL_RS27300 | Not Available | - | 6151500 - 6152021 | 19687.6 |
| type ii 3-dehydroquinate dehydratase | PFL_RS27305 | Not Available | + | 6152281 - 6152730 | 16314.5 |
| shikimate dehydrogenase | PFL_RS27310 | Not Available | + | 6152727 - 6153581 | 30402.7 |
| hypothetical protein | PFL_RS27315 | Not Available | - | 6153649 - 6153873 | 8221.63 |
| tetr/acrr family transcriptional regulator | PFL_RS27320 | Not Available | - | 6153988 - 6154665 | 26058.3 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


