Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome ubiquinol oxidase subunit i | PFL_RS27225 | Not Available | - | 6133731 - 6135170 | 53435.3 |
| mfs transporter | PFL_RS27230 | Not Available | + | 6135743 - 6136981 | 44139.0 |
| hypothetical protein | PFL_RS27235 | Not Available | - | 6137028 - 6137312 | 10292.2 |
| type ii toxin-antitoxin system rele/pare family toxin | PFL_RS27240 | Not Available | + | 6137750 - 6138028 | 10715.8 |
| higa family addiction module antitoxin | PFL_RS27245 | Not Available | + | 6138044 - 6138334 | 10640.9 |
| dj-1 family glyoxalase iii | PFL_RS27250 | Not Available | - | 6138338 - 6138889 | 19233.7 |
| duf4879 domain-containing protein | PFL_RS27255 | Not Available | - | 6138956 - 6139405 | 15876.9 |
| ncs2 family permease | PFL_RS27260 | Not Available | + | 6139612 - 6140904 | 44638.2 |
| trna (uridine(54)-c5)-methyltransferase trma | PFL_RS27265 | Not Available | + | 6140901 - 6141980 | 40831.6 |
| tolc family outer membrane protein | PFL_RS27270 | Not Available | - | 6142187 - 6143527 | 49868.5 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


