Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | PFL_RS01860 | Not Available | + | 416510 - 417247 | 25795.1 |
| imidazole glycerol phosphate synthase subunit hisf | PFL_RS01865 | Not Available | + | 417257 - 418027 | 27167.5 |
| abc transporter substrate-binding protein | PFL_RS01870 | Not Available | + | 418091 - 418846 | 27868.9 |
| divergent polysaccharide deacetylase family protein | PFL_RS01875 | Not Available | - | 418885 - 419691 | 29406.0 |
| s41 family peptidase | PFL_RS01880 | Not Available | - | 419807 - 421117 | 46174.4 |
| murein hydrolase activator envc | PFL_RS01885 | Not Available | - | 421149 - 422435 | 47673.6 |
| duf1460 domain-containing protein | PFL_RS01890 | Not Available | - | 422610 - 423524 | 32994.1 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | PFL_RS01895 | Not Available | - | 423691 - 425232 | 55595.2 |
| rhodanese-like domain-containing protein | PFL_RS01900 | Not Available | + | 425397 - 425810 | 14606.8 |
| glutaredoxin 3 | PFL_RS01905 | Not Available | + | 425810 - 426064 | 9039.96 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


