Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | PFL_RS01510 | Not Available | - | 343024 - 343911 | 32915.8 |
| peptidoglycan-binding protein lysm | PFL_RS01515 | Not Available | + | 344048 - 344488 | 15552.7 |
| gmp/imp nucleotidase | PFL_RS01520 | Not Available | - | 344557 - 345219 | 25238.2 |
| adp compounds hydrolase nude | PFL_RS01525 | Not Available | + | 345444 - 346010 | 20818.9 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | PFL_RS01530 | Not Available | + | 346022 - 346849 | 29223.8 |
| yiid c-terminal domain-containing protein | PFL_RS01535 | Not Available | - | 346991 - 347446 | 17063.5 |
| sigma-54 dependent transcriptional regulator | PFL_RS01540 | Not Available | - | 347484 - 348890 | 51240.6 |
| atp-binding protein | PFL_RS01545 | Not Available | - | 348965 - 350773 | 66973.0 |
| dtdp-4-dehydrorhamnose reductase | PFL_RS01550 | Not Available | - | 350808 - 351689 | 32338.4 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | PFL_RS01555 | Not Available | - | 351686 - 352231 | 20516.2 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


