Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent succinate-semialdehyde dehydrogenase | PFL_RS00960 | Not Available | + | 219230 - 220672 | 51561.2 |
| 4-aminobutyrate--2-oxoglutarate transaminase | PFL_RS00965 | Not Available | + | 220850 - 222127 | 44849.6 |
| response regulator | PFL_RS00970 | Not Available | + | 222266 - 223480 | 44609.1 |
| sensor domain-containing diguanylate cyclase | PFL_RS00975 | Not Available | - | 223575 - 224567 | 37296.1 |
| delta-9 fatty acid desaturase desa | PFL_RS00980 | Not Available | - | 224784 - 225968 | 45339.1 |
| phosphodiesterase diba | PFL_RS00985 | Not Available | + | 226115 - 228034 | 71876.2 |
| sulfur starvation response protein osca | PFL_RS00990 | Not Available | + | 228335 - 228517 | 6786.11 |
| sulfate abc transporter substrate-binding protein | PFL_RS00995 | Not Available | + | 228689 - 229699 | 36720.4 |
| sulfate abc transporter permease subunit cyst | PFL_RS01000 | Not Available | + | 229850 - 230668 | 29496.3 |
| sulfate abc transporter permease subunit cysw | PFL_RS01005 | Not Available | + | 230681 - 231553 | 31397.0 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


