Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | PFL_RS00725 | Not Available | + | 164559 - 165485 | 34228.5 |
| mfs transporter | PFL_RS00730 | Not Available | + | 165662 - 167206 | 55367.9 |
| hlyd family secretion protein | PFL_RS00735 | Not Available | + | 167221 - 168291 | 37559.9 |
| efflux transporter outer membrane subunit | PFL_RS00740 | Not Available | + | 168288 - 169769 | 53798.3 |
| sigma-70 family rna polymerase sigma factor | PFL_RS00745 | Not Available | + | 169840 - 170349 | 19546.4 |
| fecr domain-containing protein | PFL_RS00750 | Not Available | + | 170346 - 171299 | 34818.5 |
| tonb-dependent siderophore receptor | PFL_RS00755 | Not Available | + | 171398 - 173863 | 89282.6 |
| duf3142 domain-containing protein | PFL_RS00760 | Not Available | - | 173960 - 174706 | 28004.8 |
| hypothetical protein | PFL_RS00765 | Not Available | - | 174676 - 176868 | 80364.2 |
| glycosyltransferase family 39 protein | PFL_RS00770 | Not Available | + | 177195 - 178805 | 59132.7 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


