Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dopa 4,5-dioxygenase family protein | PFL_RS00175 | Not Available | + | 36554 - 36880 | 12304.8 |
| anti-virulence regulator cigr family protein | PFL_RS00180 | Not Available | - | 36936 - 37379 | 16247.6 |
| tryptophan synthase subunit alpha | PFL_RS00185 | Not Available | - | 37501 - 38313 | 28429.1 |
| tryptophan synthase subunit beta | PFL_RS00190 | Not Available | - | 38313 - 39533 | 44407.2 |
| lysr family transcriptional regulator | PFL_RS00195 | Not Available | + | 39681 - 40574 | 32545.1 |
| yqjd family protein | PFL_RS00200 | Not Available | - | 40571 - 40897 | 11699.8 |
| dodecin | PFL_RS00205 | Not Available | + | 41056 - 41271 | 7955.38 |
| duf1161 domain-containing protein | PFL_RS00210 | Not Available | + | 41406 - 41630 | 7474.09 |
| llm class flavin-dependent oxidoreductase | PFL_RS00215 | Not Available | - | 41691 - 42692 | 36334.8 |
| osmc family protein | PFL_RS00220 | Not Available | + | 42933 - 43364 | 14967.0 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


