Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Peptidase m23 | PFL_RS31795 | Not Available | + | 1380416 - 1381276 | 30158.9 |
| Rna polymerase sigma factor | PFL_RS06115 | Not Available | + | 1381383 - 1382390 | 38245.6 |
| ferredoxin fdxa | PFL_RS06120 | Not Available | - | 1382903 - 1383226 | 12231.5 |
| Putative mismatch repair protein | PFL_RS06125 | Not Available | - | 1383370 - 1385949 | 95197.4 |
| Putative cro/ci transcriptional regulator | PFL_RS06130 | Not Available | + | 1386136 - 1386882 | 27967.1 |
| phage holin family protein | PFL_RS06135 | Not Available | + | 1387400 - 1387750 | 12380.2 |
| Transcriptional regulator | PFL_RS06140 | Not Available | + | 1387849 - 1388166 | 11402.5 |
| Minor tail protein | PFL_RS06145 | Not Available | + | 1388216 - 1389352 | 40968.5 |
| Hypothetical protein | PFL_RS06150 | Not Available | + | 1389510 - 1390091 | 20897.9 |
| Hypothetical protein | PFL_RS06155 | Not Available | + | 1390088 - 1390270 | 6345.57 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


