Pectobacterium atrosepticum SCRI1043

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium atrosepticum strain SCRI1043. This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Genome analysis indicates this organism can fix nitrogen as well as catabolize plant-produced opines. The chromosome also encodes an extensive array of plant cell wall-degrading enzymes such as pectinases as well as all 6 of the known secretion systems. This suggests extensive secretion of pathogenicity determinants such as the aforementioned degradative enzymes but also others such as avirulence proteins. Disruption of the type IV secretion system affected virulence as well, suggesting it is does not simply reflect an integrated plasmid in the chromosome. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium atrosepticum
StrainSCRI1043

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature27
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Pectobacterium atrosepticum SCRI1043

Accession NumberNC_004547.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4363 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
class ii fructose-bisphosphataseECA_RS21150Not Available+4782875 - 478388535824.5
ferredoxin--nadp(+) reductaseECA_RS21155Not Available+4784192 - 478493827871.6
duf805 domain-containing proteinECA_RS21160Not Available-4784957 - 478537916293.3
yiiq family proteinECA_RS21165Not Available+4785577 - 478617621841.2
triose-phosphate isomeraseECA_RS21170Not Available+4786326 - 478709326748.9
agmatine deiminaseECA_RS21175Not Available-4787304 - 478840740702.0
n-carbamoylputrescine amidaseECA_RS21180Not Available-4788411 - 478929532695.8
hcp family type vi secretion system effectorECA_RS21185Not Available+4790053 - 479057119093.5
type vi secretion system tip protein vgrgECA_RS21190Not Available+4790693 - 479252267058.6
duf1795 domain-containing proteinECA_RS21195Not Available+4792551 - 479299716079.0

Displaying genes 4331 – 4340 of 4578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 139 metabolites