Pectobacterium atrosepticum SCRI1043

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium atrosepticum strain SCRI1043. This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Genome analysis indicates this organism can fix nitrogen as well as catabolize plant-produced opines. The chromosome also encodes an extensive array of plant cell wall-degrading enzymes such as pectinases as well as all 6 of the known secretion systems. This suggests extensive secretion of pathogenicity determinants such as the aforementioned degradative enzymes but also others such as avirulence proteins. Disruption of the type IV secretion system affected virulence as well, suggesting it is does not simply reflect an integrated plasmid in the chromosome. (NCBI BioProject: bp_list[1])

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Enterobacterales
Family	Pectobacteriaceae
Genus	Pectobacterium
Species	Pectobacterium atrosepticum
Strain	SCRI1043

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	Yes
Flagellar presence	Not Available
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	27
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Pectobacterium atrosepticum SCRI1043

Accession NumberNC_004547.2

Gene Summary

Adenine Count

1244797 bp

Thymine Count

1238227 bp

Guanine Count

1290827 bp

Cytosine Count

1290168 bp

Genome Length

5064019 bp

Protein-coding Genes

4363 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
yqaa family protein	ECA_RS16610	Not Available	-	3779576 - 3780004	15559.5
fructose-1-phosphate/6-phosphogluconate phosphatase	ECA_RS16615	Not Available	-	3780001 - 3780567	20911.0
Trna-arg	Not Available	Not Available	+	3781091 - 3781167	Not Available
Trna-arg	Not Available	Not Available	+	3781221 - 3781297	Not Available
Trna-arg	Not Available	Not Available	+	3781369 - 3781445	Not Available
Trna-ser	Not Available	Not Available	+	3781454 - 3781546	Not Available
carbon storage regulator csra	ECA_RS16640	Not Available	-	3781840 - 3782025	6839.35
alanine--trna ligase	ECA_RS16645	Not Available	-	3782345 - 3784972	95969.5
recombination regulator recx	ECA_RS16650	Not Available	-	3785110 - 3785598	18906.2
recombinase reca	ECA_RS16655	Not Available	-	3785644 - 3786717	38286.1

Displaying genes 3461 – 3470 of 4578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000274	aldehydo-D-galacturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8		Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000503	L-rhamnoseC6H12O5		`3615-41-6`	Average164.1565Da Monoisotopic164.0684735Da
BASm0000716	4-methylsulfanyl-2-oxobutanoateC5H7O3S		Not available	Average147.17Da Monoisotopic147.012138839Da
BASm0000876	3-hydroxypyruvateC3H3O4		Not available	Average103.054Da Monoisotopic103.003682157Da
BASm0001111	keto-D-tagaturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da

Displaying 1–10 of 139 metabolites