Pseudomonas [fluorescens] SBW25

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fluorescens SBW25 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotrophic aerobe, thriving optimally at a temperature of 25.0°C. This strain is known for its versatile metabolic capabilities, enabling it to utilize a variety of organic compounds as energy sources. Pseudomonas fluorescens species, including SBW25, are commonly found in diverse habitats, often in soil and water environments, where they play crucial roles in nutrient cycling and organic matter degradation. The ability of Pseudomonas fluorescens SBW25 to thrive in multiple habitats highlights its ecological flexibility and resilience. This adaptability may contribute to its importance in bioremediation processes, where it can assist in the breakdown of pollutants, thereby improving environmental health. Moreover, the strain's aerobic nature indicates that it requires oxygen for growth, which can affect its distribution and interactions within various ecosystems. Overall, Pseudomonas fluorescens SBW25 serves as a model organism for studying microbial ecology and the dynamics of microbial communities in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas [fluorescens] SBW25
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas [fluorescens] SBW25

Accession NumberNC_012660.1

Gene Summary

Adenine Count

1322487 bp

Thymine Count

1332609 bp

Guanine Count

2034487 bp

Cytosine Count

2032956 bp

Genome Length

6722539 bp

Protein-coding Genes

5969 genes

Non-Coding Genes

191 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
l-threonylcarbamoyladenylate synthasePFLU_RS00105Not Available+23630 - 2418720670.8
nadph:quinone reductasePFLU_RS00110Not Available-24335 - 2531234226.0
oxygen-dependent coproporphyrinogen oxidasePFLU_RS00115Not Available+25472 - 2640435337.4
shikimate dehydrogenasePFLU_RS00120Not Available+26404 - 2722229353.3
sulp family inorganic anion transporterPFLU_RS00125Not Available-27274 - 2884256299.8
choline abc transporter substrate-binding proteinPFLU_RS00130Not Available-28940 - 2985433067.8
choline-sulfatasePFLU_RS00135Not Available-29873 - 3138757040.6
choline sulfate utilization transcriptional regulatorPFLU_RS00140Not Available+31491 - 3244135564.4
dopa 4,5-dioxygenase family proteinPFLU_RS00145Not Available+32473 - 3280212518.0
2-dehydro-3-deoxygalactonokinasePFLU_RS00150Not Available+32899 - 3385833573.4

Displaying genes 171 – 180 of 6160 in total

Pathways

3 pathways

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm00040072-methoxy-6-all-trans-octaprenyl-1,4-benzoquinolC47H72O3Chemical structure of 2-methoxy-6-all-trans-octaprenyl-1,4-benzoquinolNot available
Average685.0728Da
Monoisotopic684.5481462Da
BASm0004094di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC95H152N8O28P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1916.239Da
Monoisotopic1915.021324602Da
BASm0004925UDP-N-acetyl-alpha-D-muramateC20H28N3O19P2Chemical structure of UDP-N-acetyl-alpha-D-muramateNot available
Average676.395Da
Monoisotopic676.080870429Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm00141874-Hydroxybenzoic acidC7H6O3Chemical structure of 4-Hydroxybenzoic acidNULL
Average138.122Da
Monoisotopic138.031694053Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017286Octaprenyl diphosphateC40H68O7P2Chemical structure of Octaprenyl diphosphateNULL
Average722.9112Da
Monoisotopic722.444027554Da

Displaying 1–10 of 19 metabolites