Croceibacter atlanticus HTCC2559

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Croceibacter

Description

Croceibacter atlanticus HTCC2559T was cultivated from seawater collected at a depth of 250 m from the Sargasso Sea and was isolated by high throughput dilution-to-extinction culturing. It is a bright saffron-colored, strictly aerobic, obligate chemoheterotroph. Cells are non-motile straight rods, about 1.9 um long and 0.4 um wide, dividing by binary fission. Temperature range for growth is 10 - 28 degrees C, with optimum growth at 20 - 23 degrees C with no growth observed at 4 and 30 degrees C. The pH range for growth is pH 6.0 - 10.0, with optimum growth at pH 7.5 - 8.0. It is moderately halophilic, showing good growth at NaCl concentrations of 0.5 - 15% (w/v), with optimal growth at 3.0% (w/v) NaCl. As suggested by it color, it produces carotenoid pigments with wavelength absorbance spectral peaks at 318 and 483 nm. There was no difference in the spectral peaks between light-grown and dark-grown cultures. It degrades gelatin, DNA, starch, casein, and elastin, but not cellulose (adapted from PMID 12747413 and 20639333). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCroceibacter
SpeciesCroceibacter atlanticus
StrainHTCC2559

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Croceibacter atlanticus HTCC2559
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemoheterotroph
PathogenicityNo

Genome Summary

Croceibacter atlanticus HTCC2559

Accession NumberNC_014230.1

Gene Summary

Adenine Count

971329 bp

Thymine Count

980578 bp

Guanine Count

496240 bp

Cytosine Count

504815 bp

Genome Length

2952962 bp

Protein-coding Genes

2673 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
helix-turn-helix domain-containing proteinCA2559_RS12135Not Available-2669161 - 267063656760.4
malate synthase aCA2559_RS12140Not Available+2670757 - 267235561457.6
isocitrate lyaseCA2559_RS12145Not Available+2672428 - 267408662093.4
gh3 family domain-containing proteinCA2559_RS12150Not Available-2674279 - 267580257761.3
thioredoxin-dependent thiol peroxidaseCA2559_RS12155Not Available-2675805 - 267625416645.7
pqq-dependent sugar dehydrogenaseCA2559_RS12160Not Available+2676441 - 267761943722.8
c-type cytochromeCA2559_RS12165Not Available+2677619 - 267807116811.0
tigr04086 family membrane proteinCA2559_RS12170Not Available-2678075 - 267972163530.8
dna helicase recqCA2559_RS12175Not Available-2679810 - 268201482868.1
kpsf/gutq family sugar-phosphate isomeraseCA2559_RS12180Not Available+2682099 - 268306434382.6

Displaying genes 2451 – 2460 of 2719 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites