Ruminococcus champanellensis 18P13 = JCM 17042

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus champanellensis 18P13, also known as JCM 17042, is a type of bacterium that thrives in a warm environment, with a temperature preference category of mesophilic, characterized by temperatures between 20-40°C. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, rather than producing its own energy through photosynthesis or chemosynthesis. Energy production is achieved through aerobic respiration, utilizing oxygen as a final electron acceptor. The bacterium is comprised of a gram-positive cell wall, featuring a characteristic shape of curved rods or "cigar-shaped" cells. Originally isolated from the gut of a ruminant host, such as a cow or sheep, Ruminococcus champanellensis 18P13 is found in the gastrointestinal tract of these animals, as well as potentially in other body sites across various species. Oxygen preference is aerobic, meaning it requires the presence of oxygen to grow and thrive. In fact, it is an obligate aerobic, which suggests that it cannot survive in the absence of oxygen. Furthermore, Ruminococcus champanellensis 18P13 is a key member of the gut microbiota, playing a crucial role in the degradation of complex plant polymers and the extraction of nutrients from the diet of its hosts. Its unique set of enzymes and metabolic pathways allows it to contribute to the breakdown of cellulose, hemicellulose, and other dietary fiber components, ultimately influencing the host's nutritional status and overall health. Despite its limited cultivation on laboratory media, Ruminococcus champanellensis 18P13 has been extensively investigated due to its importance in the ruminant gut ecosystem. Its enzymes and metabolic pathways have been studied in detail, providing valuable insights into the evolution of gut microbiota and the degradation of plant material.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus champanellensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus champanellensis 18P13 = JCM 17042

Accession NumberNC_021039.1

Gene Summary

Adenine Count

585343 bp

Thymine Count

584638 bp

Guanine Count

693827 bp

Cytosine Count

649573 bp

Genome Length

2573208 bp

Protein-coding Genes

2325 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1862839 - 1862851Not Available
Membrane proteinRUM_RS12160Not Available-1869525 - 1872452103906.0
hypothetical proteinRUM_RS08460Not Available-1872427 - 18726879795.5
hypothetical proteinRUM_RS08465Not Available-1872708 - 187312415621.7
phage major tail protein 2RUM_RS08470Not Available-1873186 - 187360814711.0
minor capsid proteinRUM_RS08475Not Available-1873610 - 187395112755.1
hypothetical proteinRUM_RS08480Not Available-1873948 - 187446019039.9
dnat-like ssdna-binding proteinRUM_RS08485Not Available-1874726 - 187522018263.4
Coat proteinRUM_RS08490Not Available-1875223 - 187629338741.5
Putative scaffold proteinRUM_RS08495Not Available-1876309 - 187687820564.2

Displaying genes 1 – 10 of 2390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm0003335L-glutamyl 5-phosphateC5H8NO7PChemical structure of L-glutamyl 5-phosphateNot available
Average225.094Da
Monoisotopic225.0049358Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm00033514-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PSChemical structure of 4-methyl-5-(2-phosphooxyethyl)-thiazoleNot available
Average221.17Da
Monoisotopic220.9922631Da
BASm0003376D-allose 6-phosphateC6H13O9PChemical structure of D-allose 6-phosphateNot available
Average260.1358Da
Monoisotopic260.0297185Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da

Displaying 41–50 of 248 metabolites