Ruminococcus champanellensis 18P13 = JCM 17042

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus champanellensis 18P13, also known as JCM 17042, is a type of bacterium that thrives in a warm environment, with a temperature preference category of mesophilic, characterized by temperatures between 20-40°C. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, rather than producing its own energy through photosynthesis or chemosynthesis. Energy production is achieved through aerobic respiration, utilizing oxygen as a final electron acceptor. The bacterium is comprised of a gram-positive cell wall, featuring a characteristic shape of curved rods or "cigar-shaped" cells. Originally isolated from the gut of a ruminant host, such as a cow or sheep, Ruminococcus champanellensis 18P13 is found in the gastrointestinal tract of these animals, as well as potentially in other body sites across various species. Oxygen preference is aerobic, meaning it requires the presence of oxygen to grow and thrive. In fact, it is an obligate aerobic, which suggests that it cannot survive in the absence of oxygen. Furthermore, Ruminococcus champanellensis 18P13 is a key member of the gut microbiota, playing a crucial role in the degradation of complex plant polymers and the extraction of nutrients from the diet of its hosts. Its unique set of enzymes and metabolic pathways allows it to contribute to the breakdown of cellulose, hemicellulose, and other dietary fiber components, ultimately influencing the host's nutritional status and overall health. Despite its limited cultivation on laboratory media, Ruminococcus champanellensis 18P13 has been extensively investigated due to its importance in the ruminant gut ecosystem. Its enzymes and metabolic pathways have been studied in detail, providing valuable insights into the evolution of gut microbiota and the degradation of plant material.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus champanellensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus champanellensis 18P13 = JCM 17042

Accession NumberNC_021039.1

Gene Summary

Adenine Count

585343 bp

Thymine Count

584638 bp

Guanine Count

693827 bp

Cytosine Count

649573 bp

Genome Length

2573208 bp

Protein-coding Genes

2325 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1862839 - 1862851Not Available
Membrane proteinRUM_RS12160Not Available-1869525 - 1872452103906.0
hypothetical proteinRUM_RS08460Not Available-1872427 - 18726879795.5
hypothetical proteinRUM_RS08465Not Available-1872708 - 187312415621.7
phage major tail protein 2RUM_RS08470Not Available-1873186 - 187360814711.0
minor capsid proteinRUM_RS08475Not Available-1873610 - 187395112755.1
hypothetical proteinRUM_RS08480Not Available-1873948 - 187446019039.9
dnat-like ssdna-binding proteinRUM_RS08485Not Available-1874726 - 187522018263.4
Coat proteinRUM_RS08490Not Available-1875223 - 187629338741.5
Putative scaffold proteinRUM_RS08495Not Available-1876309 - 187687820564.2

Displaying genes 1 – 10 of 2390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0019999AllysineC6H11NO3Chemical structure of Allysine1962-83-0
Average145.1564Da
Monoisotopic145.0738932Da
BASm0020004UDP-D-glucoseC15H24N2O17P2Chemical structure of UDP-D-glucose133-89-1
Average566.3018Da
Monoisotopic566.055020376Da
BASm0020017trans-tetradec-2-enoyl-CoAC35H60N7O17P3SChemical structure of trans-tetradec-2-enoyl-CoANULL
Average975.874Da
Monoisotopic975.297923755Da
BASm002002210-Formyltetrahydrofolic acidC20H23N7O7Chemical structure of 10-Formyltetrahydrofolic acid2800-34-2
Average473.4393Da
Monoisotopic473.165896125Da
BASm0020027oleoyl-CoAC39H68N7O17P3SChemical structure of oleoyl-CoA1716-06-9
Average1031.98Da
Monoisotopic1031.360524011Da
BASm0034603PhosphoribosylformylglycinamidineC8H16N3O8PChemical structure of Phosphoribosylformylglycinamidine37721-04-3
Average313.203Da
Monoisotopic313.067501485Da
BASm0034607dTDP-4-oxo-6-deoxy-D-glucoseC16H24N2O15P2Chemical structure of dTDP-4-oxo-6-deoxy-D-glucose16752-71-9
Average546.3137Da
Monoisotopic546.065191132Da
BASm0034608Deoxyadenosine triphosphateC10H16N5O12P3Chemical structure of Deoxyadenosine triphosphate1927-31-7
Average491.1816Da
Monoisotopic491.000830537Da
BASm0034609Folinic acidC20H23N7O7Chemical structure of Folinic acid68538-85-2
Average473.4393Da
Monoisotopic473.165896125Da
BASm0034613Palmitoleyl-CoAC37H64N7O17P3SChemical structure of Palmitoleyl-CoA18198-76-0
Average1003.93Da
Monoisotopic1003.329225797Da

Displaying 231–240 of 248 metabolites