Ruminococcus champanellensis 18P13 = JCM 17042

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus champanellensis 18P13, also known as JCM 17042, is a type of bacterium that thrives in a warm environment, with a temperature preference category of mesophilic, characterized by temperatures between 20-40°C. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, rather than producing its own energy through photosynthesis or chemosynthesis. Energy production is achieved through aerobic respiration, utilizing oxygen as a final electron acceptor. The bacterium is comprised of a gram-positive cell wall, featuring a characteristic shape of curved rods or "cigar-shaped" cells. Originally isolated from the gut of a ruminant host, such as a cow or sheep, Ruminococcus champanellensis 18P13 is found in the gastrointestinal tract of these animals, as well as potentially in other body sites across various species. Oxygen preference is aerobic, meaning it requires the presence of oxygen to grow and thrive. In fact, it is an obligate aerobic, which suggests that it cannot survive in the absence of oxygen. Furthermore, Ruminococcus champanellensis 18P13 is a key member of the gut microbiota, playing a crucial role in the degradation of complex plant polymers and the extraction of nutrients from the diet of its hosts. Its unique set of enzymes and metabolic pathways allows it to contribute to the breakdown of cellulose, hemicellulose, and other dietary fiber components, ultimately influencing the host's nutritional status and overall health. Despite its limited cultivation on laboratory media, Ruminococcus champanellensis 18P13 has been extensively investigated due to its importance in the ruminant gut ecosystem. Its enzymes and metabolic pathways have been studied in detail, providing valuable insights into the evolution of gut microbiota and the degradation of plant material.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus champanellensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus champanellensis 18P13 = JCM 17042

Accession NumberNC_021039.1

Gene Summary

Adenine Count

585343 bp

Thymine Count

584638 bp

Guanine Count

693827 bp

Cytosine Count

649573 bp

Genome Length

2573208 bp

Protein-coding Genes

2325 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1862839 - 1862851Not Available
Membrane proteinRUM_RS12160Not Available-1869525 - 1872452103906.0
hypothetical proteinRUM_RS08460Not Available-1872427 - 18726879795.5
hypothetical proteinRUM_RS08465Not Available-1872708 - 187312415621.7
phage major tail protein 2RUM_RS08470Not Available-1873186 - 187360814711.0
minor capsid proteinRUM_RS08475Not Available-1873610 - 187395112755.1
hypothetical proteinRUM_RS08480Not Available-1873948 - 187446019039.9
dnat-like ssdna-binding proteinRUM_RS08485Not Available-1874726 - 187522018263.4
Coat proteinRUM_RS08490Not Available-1875223 - 187629338741.5
Putative scaffold proteinRUM_RS08495Not Available-1876309 - 187687820564.2

Displaying genes 1 – 10 of 2390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm00190192-C-Methyl-D-erythritol 2,4-cyclodiphosphateC5H12O9P2Chemical structure of 2-C-Methyl-D-erythritol 2,4-cyclodiphosphateNULL
Average278.0909Da
Monoisotopic277.995655006Da
BASm0019023Ferrocytochrome cC5H12Chemical structure of Ferrocytochrome cNULL
Average72.1488Da
Monoisotopic72.093900384Da
BASm00190263-phospho-D-glyceroyl phosphateC3H8O10P2Chemical structure of 3-phospho-D-glyceroyl phosphateNULL
Average266.0371Da
Monoisotopic265.9592695Da
BASm0019129PolyphosphateH5O10P3Chemical structure of PolyphosphateNULL
Average257.955Da
Monoisotopic257.909555916Da
BASm0019155HomocysteineC4H9NO2SChemical structure of HomocysteineNULL
Average135.185Da
Monoisotopic135.035399227Da
BASm00191605,10-Methenyltetrahydrofolic acidC20H21N7O6Chemical structure of 5,10-Methenyltetrahydrofolic acidNULL
Average455.424Da
Monoisotopic455.155331439Da
BASm00199285-Methyltetrahydrofolic acidC20H25N7O6Chemical structure of 5-Methyltetrahydrofolic acid134-35-0
Average459.4558Da
Monoisotopic459.186631567Da
BASm0019931N-Acetylglutamic acidC7H11NO5Chemical structure of N-Acetylglutamic acid1188-37-0
Average189.1659Da
Monoisotopic189.063722467Da
BASm00199488-Amino-7-oxononanoateC9H17NO3Chemical structure of 8-Amino-7-oxononanoate4707-58-8
Average187.2362Da
Monoisotopic187.120843415Da
BASm0019985Nicotinic acid mononucleotideC11H16NO9PChemical structure of Nicotinic acid mononucleotide321-02-8
Average337.2198Da
Monoisotopic337.056267627Da

Displaying 221–230 of 248 metabolites