Pseudomonas syringae pv. syringae B728a

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

This plant pathogen causes disease in a wide range of plants and crops, including bacterial speck on tomatoes. Black specks form on the leaves and fruit, stunting growth. This gram negative pathogen also causes halo blight of beans. It is primarily seed-borne, and can also be spread from plant to plant by rain. Pseudomonas syringae is a model organism in plant pathology.This is a very versatile organism with several important phenotypes that have made it a focus of study and commercial application and a relevant organism for the DOE in the USA to support resarch, as this plant pathogen causes disease in a variety of plant species, severely impacting both food and biomass production.Also strains of P. syringae have been exploited for a variety of industrial purposes of significance to DOE. For example, many strains of this species are active as ice nuclei catalyzing ice formation at temperatures approaching 0 C. For this reason they have been exploited as artificial ice nucleating agents in processes such as those involved in artificial snow production. A major use of the freeze-dried cells of P. syringae used in such an application has been in the creation of artificial ice islands to facilitate offshore oil drilling in cold oceans such as in the arctic. In a similar application there has been interest in using such ice nucleation active bacteria for the production of artificial mountains of ice in the winter for use in summer cooling of large industrial and office buildings. There is also considerable activity in the study of the use of such bacterial ice nuclei in improving the process of freezing of various foods, including frozen emulsified foods such as ice cream to improve both the energy efficiency of the process and quality of the product.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
StrainB728a

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae B728a
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Pseudomonas syringae pv. syringae B728a


Gene Summary

Adenine Count

1357034 bp

Thymine Count

1331887 bp

Guanine Count

1891949 bp

Cytosine Count

1937382 bp

Genome Length

6518252 bp

Protein-coding Genes

5783 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinDND47_23890Not Available+5170484 - 517081011503.0
had family hydrolaseDND47_23895Not Available-5170881 - 517157325527.3
tyrosine recombinase xercDND47_23900Not Available-5171566 - 517246533642.1
duf484 family proteinDND47_23905Not Available-5172468 - 517320227003.5
diaminopimelate epimeraseDND47_23910Not Available-5173216 - 517404630400.5
diaminopimelate decarboxylaseDND47_23915Not Available-5174052 - 517529945214.0
hypothetical proteinDND47_23920Not Available-5175309 - 51754555135.28
iron donor protein cyayDND47_23925Not Available+5175694 - 517602612470.2
duf1289 domain-containing proteinDND47_23930Not Available+5176029 - 51762658915.52
nucleoside diphosphate kinase regulatorDND47_23935Not Available+5176400 - 517680714562.3

Displaying genes 4601 – 4610 of 11225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1768 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1768 metabolites