Yersinia pestis KIM10+

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia pestis KIM10+ is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is nonsporulating. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Yersinia pestis KIM10+ is a heterotroph, obtaining its energy from organic compounds, and it optimally grows at a temperature of 28.0°C. The versatility in habitat suggests that this strain can adapt to various ecological niches, potentially influencing its interactions within diverse microbial communities. Its facultative nature may also indicate a capacity to survive in fluctuating environmental conditions, which could have implications for its persistence in the environment and its potential transmission pathways. Understanding the traits of Yersinia pestis KIM10+ provides insights into the adaptability and ecological role of this bacterium, highlighting its ability to occupy various ecological niches and its relevance in the study of microbial survival strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pestis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pestis KIM10+
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy source Heterotroph
PathogenicityNot Available

Genome Summary

Yersinia pestis KIM10+

Accession NumberNC_004088.1

Gene Summary

Adenine Count

1200303 bp

Thymine Count

1208599 bp

Guanine Count

1101384 bp

Cytosine Count

1090469 bp

Genome Length

4600755 bp

Protein-coding Genes

3961 genes

Non-Coding Genes

182 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail proteinY_RS15040Not Available-3238400 - 323874712803.5
putative phage tail proteinY_RS15045Not Available-3238744 - 32390049433.29
Base plate j proteinY_RS15050P75981-3239001 - 324013740019.3
Hypothetical proteinY_RS15055Q9T1V3-3240141 - 324059616700.6
Putative base plate assembly proteinY_RS15060Not Available-3240593 - 324118921214.0
Tail proteinY_RS15065Not Available-3241205 - 324226038679.2
Tail/dna circulation proteinY_RS15070Not Available-3242257 - 324366350143.8
coat proteinY_RS15075Not Available-3243930 - 324542354785.3
phage tail assembly proteinY_RS15080Not Available-3245544 - 324584310927.2
Hypothetical proteinY_RS15085Not Available-3245845 - 324621313142.4

Displaying genes 81 – 90 of 4252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

275 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 275 metabolites