Varibaculum cambriense str. DNF00696

Gram-positiveFacultative anaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Varibaculum

Description

Varibaculum cambriense str. DNF00696 is a Gram-positive, facultative anaerobic bacterium characterized by its ability to thrive in both aerobic and anaerobic environments. As a member of the Varibaculum genus, this strain presents a significant interest due to its metabolic versatility, allowing it to adapt to varying oxygen levels. The Gram-positive nature of this microbe suggests a robust cell wall structure, which may provide advantages in specific ecological niches where physical or environmental stresses are present. Facultative anaerobes like V. cambriense str. DNF00696 can utilize oxygen for respiration when available, but they are also capable of fermentative metabolism under anaerobic conditions. This adaptability implies the potential for survival in diverse habitats, including those where oxygen may fluctuate, such as in sedimentary environments or within the gastrointestinal tracts of various organisms. Understanding the ecological role of V. cambriense str. DNF00696 may provide insights into microbial community dynamics, particularly in environments where oxygen availability is variable. Its ability to utilize different metabolic pathways could influence nutrient cycling and the overall microbial community structure in its natural habitat. Further research into the specific environmental contexts and interactions of this strain may illuminate its contributions to ecosystem functioning.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusVaribaculum
SpeciesVaribaculum cambriense
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatvaginal mucosa
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Varibaculum cambriense str. DNF00696

Accession NumberLSDN00000000.1

Gene Summary

Adenine Count

495674 bp

Thymine Count

486053 bp

Guanine Count

562782 bp

Cytosine Count

551080 bp

Genome Length

2095589 bp

Protein-coding Genes

1942 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF1862_00069Not Available+59786 - 6031018813.1
transcriptional regulator, merr familyHMPREF1862_00070Not Available+60310 - 605227804.48
hypothetical proteinHMPREF1862_00071Not Available+60522 - 6122626060.7
hypothetical proteinHMPREF1862_00072Not Available+61219 - 614619422.33
hypothetical proteinHMPREF1862_00073Not Available-61545 - 6181110063.7
hypothetical proteinHMPREF1862_00074Not Available-61804 - 6257428879.4
hypothetical proteinHMPREF1862_00075Not Available+62634 - 6331124625.3
site-specific recombinase, phage integrase familyHMPREF1862_00076Not Available-63314 - 6427635835.0
chorismate synthaseHMPREF1862_00077Not Available-64583 - 6579442683.2
hypothetical proteinHMPREF1862_00078Not Available-65884 - 6653423066.6

Displaying genes 81 – 90 of 2015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

232 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002143menaquinone-7C46H64O2Chemical structure of menaquinone-7Not available
Average648.9992Da
Monoisotopic648.4906313Da

Displaying 1–10 of 232 metabolites