Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Varibaculum cambriense str. DNF00696
Accession NumberLSDN00000000.1
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1862_00382 | Not Available | - | 417249 - 418136 | 32351.7 |
| hypothetical protein | HMPREF1862_00383 | Not Available | - | 418158 - 418961 | 29773.9 |
| riboflavin biosynthesis protein ribd | HMPREF1862_00384 | Not Available | + | 419263 - 420315 | 36684.0 |
| riboflavin synthase, alpha subunit | HMPREF1862_00385 | Not Available | + | 420300 - 420896 | 21244.6 |
| gtp cyclohydrolase ii | HMPREF1862_00386 | Not Available | + | 420893 - 422137 | 45164.0 |
| 6,7-dimethyl-8-ribityllumazine synthase | HMPREF1862_00387 | Not Available | + | 422181 - 422654 | 16391.8 |
| transcription repressor hrca | HMPREF1862_00388 | Not Available | + | 422804 - 423829 | 37608.0 |
| chaperone protein dnaj | HMPREF1862_00389 | Not Available | + | 423854 - 424960 | 39743.1 |
| rna methyltransferase, rsme family | HMPREF1862_00390 | Not Available | + | 424960 - 425742 | 27784.4 |
| putative phoh-like protein | HMPREF1862_00391 | Not Available | + | 425744 - 426703 | 34655.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.