Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Actinomycetales |
| Family | Actinomycetaceae |
| Genus | Varibaculum |
| Species | Varibaculum cambriense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | vaginal mucosa |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Varibaculum cambriense str. DNF00696
Accession NumberLSDN00000000.1
Gene Summary
Adenine Count
495674 bp
Thymine Count
486053 bp
Guanine Count
562782 bp
Cytosine Count
551080 bp
Genome Length
2095589 bp
Protein-coding Genes
1942 genes
Non-Coding Genes
73 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alkyl hydroperoxide reductase, f subunit | HMPREF1862_01151 | Not Available | + | 1242082 - 1243638 | 56101.3 |
| tigr00252 family protein | HMPREF1862_01152 | Not Available | + | 1243799 - 1244167 | 13656.6 |
| mg chelatase-like protein | HMPREF1862_01153 | Not Available | + | 1244169 - 1245611 | 51204.6 |
| hypothetical protein | HMPREF1862_01154 | Not Available | + | 1245598 - 1245723 | 4725.6 |
| dna protecting protein dpra | HMPREF1862_01155 | Not Available | + | 1245754 - 1246923 | 41701.9 |
| phage integrase, sam-like domain protein | HMPREF1862_01156 | Not Available | + | 1246902 - 1247837 | 34508.6 |
| peptidase, m23 family | HMPREF1862_01157 | Not Available | - | 1247991 - 1248287 | 10370.6 |
| ribosomal protein s2 | HMPREF1862_01158 | Not Available | + | 1248953 - 1249834 | 32287.4 |
| translation elongation factor ts | HMPREF1862_01159 | Not Available | + | 1249869 - 1250705 | 29960.9 |
| ump kinase | HMPREF1862_01160 | Not Available | + | 1250928 - 1251626 | 24596.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.