Alicycliphilus denitrificans str. BQ1

Gram-negativeMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Alicycliphilus denitrificans strain BQ1 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism, which allows it to thrive in both aerobic and anaerobic environments. This versatile metabolic capability suggests that A. denitrificans str. BQ1 can adapt to varying oxygen levels, potentially playing a role in biogeochemical cycles, particularly in environments where oxygen fluctuates. The Gram-negative nature of this microbe indicates the presence of an outer membrane containing lipopolysaccharides, which may contribute to its resistance to certain environmental stresses. The facultative lifestyle of A. denitrificans str. BQ1 enables it to utilize diverse electron acceptors for respiration, which may include nitrate, thus implicating its involvement in denitrification processes. This ability is significant in the context of nitrogen cycling, where the conversion of nitrates to nitrogen gas can help mitigate nitrogen pollution in various ecosystems. Overall, the unique metabolic traits of Alicycliphilus denitrificans str. BQ1 position it as a potentially important player in nutrient cycling, particularly in environments that experience variations in oxygen availability. Its adaptability underscores the ecological significance of facultative anaerobes in maintaining ecosystem balance and nitrogen integrity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alicycliphilus denitrificans str. BQ1

Accession NumberNKDB00000000.2

Gene Summary

Adenine Count

722073 bp

Thymine Count

727118 bp

Guanine Count

1616293 bp

Cytosine Count

1613483 bp

Genome Length

4678967 bp

Protein-coding Genes

4243 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tripartite tricarboxylate transporter substrate binding proteinCE154_000100Not Available-20505 - 2152135161.6
lysr family transcriptional regulatorCE154_000105Not Available-21794 - 2271734224.4
dmt family transporterCE154_000110Not Available+22813 - 2332817022.2
tripartite tricarboxylate transporter substrate binding protein bugdCE154_000125Not Available-24140 - 2512934543.9
phenylacetate--coa ligase family proteinCE154_000130Not Available-25255 - 2650244574.4
abc transporter atp-binding proteinCE154_000135Not Available-26593 - 2743530702.1
abc transporter permeaseCE154_000140Not Available-27575 - 2888848018.3
branched-chain amino acid abc transporter permeaseCE154_000145Not Available-28948 - 3001238061.5
branched-chain amino acid abc transporter permeaseCE154_000150Not Available-30030 - 3095932540.3
abc transporter atp-binding proteinCE154_000155Not Available-30980 - 3176529218.6

Displaying genes 51 – 60 of 4316 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 1–10 of 83 metabolites