Desulfotalea psychrophila LSv54

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfobulbia

Order

Desulfobulbales

Family

Desulfocapsaceae

Genus

Desulfotalea

Description

Desulfotalea psychrophila is a marine Gram-negative sulfate-reducing bacterium. It was isolated from permanently cold Arctic sediments off the coast of Svalbard. Its optimal growth temperature is 10 degrees Celsius but it is also able to grow at temperatures as low as -1.8 degrees Celsius. Psychrophilic sulfate-reducing bacteria are assumed to contribute significantly to the carbon and sulfur cycles.(From http://www.expasy.org/sprot/hamap/DESPS.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfobulbia
OrderDesulfobulbales
FamilyDesulfocapsaceae
GenusDesulfotalea
SpeciesDesulfotalea psychrophila
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Desulfotalea psychrophila LSv54
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature7
Temperature rangePsychrophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfotalea psychrophila LSv54

Accession NumberNC_006138.1

Gene Summary

Adenine Count

948745 bp

Thymine Count

925300 bp

Guanine Count

816327 bp

Cytosine Count

833011 bp

Genome Length

3523383 bp

Protein-coding Genes

3014 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
wbqc family proteinDP_RS00190Not Available-42313 - 4300226336.8
degt/dnrj/eryc1/strs family aminotransferaseDP_RS00195Not Available-43005 - 4411141210.7
glucose-1-phosphate thymidylyltransferase rfbaDP_RS00200Not Available-44108 - 4498932362.0
dtdp-glucose 4,6-dehydrataseDP_RS00205Not Available-44989 - 4604739704.6
nad-dependent epimerase/dehydratase family proteinDP_RS00210Not Available-46064 - 4710137998.7
vi polysaccharide biosynthesis udp-n-acetylglucosamine c-6 dehydrogenase tvibDP_RS00215Not Available-47110 - 4839046868.1
polysaccharide biosynthesis proteinDP_RS00220Not Available-48436 - 5043674606.8
gxxexxy proteinDP_RS00225Not Available-51227 - 5159813809.2
lps o-antigen chain length determinant protein wzzbDP_RS00230Not Available-53139 - 5420638444.7
wzz/fepe/etk n-terminal domain-containing proteinDP_RS00235Not Available-55062 - 5636648444.0

Displaying genes 101 – 110 of 3154 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

63 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 63 metabolites