Agrobacterium fabrum str. C58

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. C58 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25°C and requires aerobic conditions for growth. This microbe is known to inhabit a diverse range of environments, suggesting its adaptability to various ecological niches. As a member of the Agrobacterium genus, A. fabrum str. C58 is particularly notable for its role in plant-microbe interactions, where it is widely studied for its ability to transfer genetic material to plants. This trait has significant implications for biotechnology, particularly in the fields of plant genetic engineering and agricultural biotechnology. The organism's aerobic nature indicates its reliance on oxygen for metabolic processes, which may influence its distribution in environments where oxygen availability varies. The capacity to thrive in multiple habitats highlights the potential versatility of A. fabrum str. C58, enabling it to survive in both natural and anthropogenically altered ecosystems. Overall, the ecological adaptability and specific growth requirements of Agrobacterium fabrum str. C58 provide a foundation for understanding its interactions within various ecosystems, as well as its applications in sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainC58

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. C58
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Tracheophyta
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum str. C58 chromosome linear, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1830 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter periplasmic adaptor subunitATU_RS11655Not AvailablePositive2362835 - 236402841082.0
efflux rnd transporter permease subunitATU_RS11660Not AvailablePositive2364042 - 2367362119830.0
crp/fnr family transcriptional regulatorATU_RS11665Not AvailablePositive2367708 - 236839725225.6
aidb family quorum-quenching n-acyl homoserine lactonaseATU_RS11670Not AvailableNegative2368470 - 236929428981.6
urease accessory protein uregATU_RS11675Not AvailableNegative2369298 - 236990921434.8
urease accessory protein urefATU_RS11680Not AvailableNegative2370167 - 237083822999.4
urease accessory protein ureeATU_RS11685Not AvailableNegative2370842 - 237132718242.7
peroxiredoxinATU_RS11690Not AvailableNegative2371644 - 237218019844.5
tigr02117 family proteinATU_RS11695Not AvailableNegative2372336 - 237300124294.4
urease subunit alphaATU_RS11700Not AvailableNegative2373013 - 237472260818.9

Displaying genes 4191 – 4200 of 4619 in total

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017261Phenylpyruvic acidC9H8O3Chemical structure of Phenylpyruvic acid156-06-9
Average164.158Da
Monoisotopic164.047344122Da
BASm0019271ferroheme bC34H30FeN4O4Chemical structure of ferroheme bNULL
Average614.485Da
Monoisotopic614.163836Da
BASm0020436AcetosyringoneC10H12O4Chemical structure of Acetosyringone2478-38-8
Average196.1999Da
Monoisotopic196.073558872Da

Displaying 1–6 of 6 metabolites

Health Effects

Health ConditionRelationReference
Crown gallCausesPMC12602688
Hairy root diseasesCausesPMC12602688
TumorsCausesPMC12602688
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688

Displaying health effects 1 – 5 of 5 in total