Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium fabrum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium fabrum str. C58
Accession NumberNC_003063.2
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose catabolism isomerase | ATU_RS16135 | Not Available | - | 532889 - 534181 | 47074.3 |
| bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase | ATU_RS16140 | Not Available | - | 534232 - 536328 | 76184.7 |
| deor/glpr family dna-binding transcription regulator | ATU_RS16145 | Not Available | + | 536529 - 537359 | 30010.1 |
| rhamnose abc transporter substrate-binding protein | ATU_RS16150 | Not Available | + | 537407 - 538417 | 34821.9 |
| sugar abc transporter atp-binding protein | ATU_RS16155 | Not Available | + | 538641 - 540176 | 55516.5 |
| abc transporter permease | ATU_RS16160 | Not Available | + | 540191 - 541192 | 34475.2 |
| abc transporter permease | ATU_RS16165 | Not Available | + | 541189 - 542199 | 35343.6 |
| l-rhamnose mutarotase | ATU_RS16170 | Not Available | + | 542203 - 542526 | 12278.9 |
| fggy-family carbohydrate kinase | ATU_RS16175 | Not Available | + | 542523 - 543905 | 49218.6 |
| alpha/beta fold hydrolase | ATU_RS16180 | Not Available | - | 543958 - 544794 | 30291.9 |
Pathways
6 pathways
Virulence Pathway (virH operon activation)
Virulence Pathway (virH operon activation)
Virulence (virC operon activation)
Virulence (virC operon activation)
Virulence (virD operon activation)
Virulence (virD operon activation)
Phenylalanine Metabolism
Phenylalanine Metabolism
Virulence (virE operon activation)
Virulence (virE operon activation)
Virulence (virB operon activation)
Virulence (virB operon activation)
