Agrobacterium fabrum str. C58

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. C58 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25°C and requires aerobic conditions for growth. This microbe is known to inhabit a diverse range of environments, suggesting its adaptability to various ecological niches. As a member of the Agrobacterium genus, A. fabrum str. C58 is particularly notable for its role in plant-microbe interactions, where it is widely studied for its ability to transfer genetic material to plants. This trait has significant implications for biotechnology, particularly in the fields of plant genetic engineering and agricultural biotechnology. The organism's aerobic nature indicates its reliance on oxygen for metabolic processes, which may influence its distribution in environments where oxygen availability varies. The capacity to thrive in multiple habitats highlights the potential versatility of A. fabrum str. C58, enabling it to survive in both natural and anthropogenically altered ecosystems. Overall, the ecological adaptability and specific growth requirements of Agrobacterium fabrum str. C58 provide a foundation for understanding its interactions within various ecosystems, as well as its applications in sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. C58
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum str. C58

Accession NumberNC_003063.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf2794 domain-containing proteinATU_RS13065Not Available-2666534 - 266692615142.4
duf1223 domain-containing proteinATU_RS13070Not Available-2667298 - 266803826486.6
aconitate hydratase acnaATU_RS13075Not Available-2668229 - 267092297144.3
heme abc exporter atp-binding protein ccmaATU_RS13080Not Available+2671192 - 267183323039.8
heme exporter protein ccmbATU_RS13085Not Available+2672036 - 267269522809.1
heme abc transporter permeaseATU_RS13090Not Available+2672770 - 267353128261.1
heme exporter protein ccmdATU_RS13095Not Available+2673536 - 26737096164.54
dsbe family thiol:disulfide interchange proteinATU_RS13100Not Available+2673706 - 267430521032.6
sensor domain-containing diguanylate cyclaseATU_RS13105Not Available-2674325 - 267550642969.6
duf2585 domain-containing proteinATU_RS13110Not Available-2675627 - 267622322573.9

Displaying genes 4471 – 4480 of 4619 in total

Pathways

6 pathways

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017261Phenylpyruvic acidC9H8O3Chemical structure of Phenylpyruvic acid156-06-9
Average164.158Da
Monoisotopic164.047344122Da
BASm0019271ferroheme bC34H30FeN4O4Chemical structure of ferroheme bNULL
Average614.485Da
Monoisotopic614.163836Da
BASm0020436AcetosyringoneC10H12O4Chemical structure of Acetosyringone2478-38-8
Average196.1999Da
Monoisotopic196.073558872Da

Displaying 1–5 of 5 metabolites