Staphylococcus epidermidis RP62A

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Staphylococcaceae

Genus

Staphylococcus

Description

Staphylococcus epidermidis RP62A is a Gram-positive, cocci-shaped bacterium that thrives optimally at human body temperature (37°C), categorizing it as a mesophile. As a heterotroph, it derives its nutrients from organic carbon sources, specifically utilizing complex carbohydrates and proteins found in its environment. This organism is naturally found on human skin and mucosal surfaces, highlighting its presence as part of the normal microbiota of all possible sites on the human body, including the epidermis, respiratory tract, and urogenital tract. The shape of S. epidermidis is spherical, typically appearing in clusters resembling grapes. This arrangement facilitates its ability to form biofilms, particularly on medical devices such as catheters and prosthetic heart valves. As a facultative anaerobe, S. epidermidis can grow in both aerobic and anaerobic environments, allowing it to adapt to diverse host conditions. Its metabolic versatility contributes to its survival and colonization ability across various body sites. S. epidermidis RP62A is known for its role as a commensal organism, contributing to the skin’s natural defense mechanism against pathogenic bacteria by competing for nutrients and producing antimicrobial peptides. However, it can also be an opportunistic pathogen, particularly in immunocompromised individuals or those with implanted medical devices, leading to infections that are often associated with biofilm formation.This strain, in particular, has been extensively studied due to its ability to resist many antibiotics, offering insights into the mechanisms of antibiotic resistance and biofilm-related infections. The intricate balance between its role as a harmless commensal and a potential pathogen emphasizes the complexity of the human microbiome and its implications for health and disease.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyStaphylococcaceae
GenusStaphylococcus
SpeciesStaphylococcus epidermidis
StrainRP62A

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Staphylococcus epidermidis RP62A
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementClusters - Singles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Staphylococcus epidermidis RP62A

Accession NumberNC_006663.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type iii-a crispr-associated protein cas10/csm1SERP_RS12060Not Available-2514048 - 251632187585.7
crispr-associated endonuclease cas2SERP_RS12065Not Available-2516334 - 251663911862.7
type ii crispr-associated endonuclease cas1SERP_RS12070Not Available-2516639 - 251754435452.2
persulfide dioxygenase-sulfurtransferase cstbSERP_RS12075Not Available-2518529 - 25186725666.71
tandem-type lipoproteinSERP_RS12080Not Available-2518785 - 251956430271.0
duf1643 domain-containing proteinSERP_RS12085Not Available+2520514 - 252101719260.5
hypothetical proteinSERP_RS12090Not Available+2521032 - 25212538435.88
zinc-dependent alcohol dehydrogenase family proteinSERP_RS12095Not Available-2521511 - 252263840282.5
gnat family n-acetyltransferaseSERP_RS12100Not Available+2523162 - 252365919782.7
restriction endonuclease subunit sSERP_RS12105Not Available-2523971 - 252511644666.9

Displaying genes 2451 – 2460 of 2534 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites