Xylella fastidiosa 9a5c

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xylella

Description

Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXylella
SpeciesXylella fastidiosa
Strain9a5c

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xylella fastidiosa 9a5c
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature26
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xylella fastidiosa 9a5c

Accession NumberNC_002488.3

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2152 genes

Non-Coding Genes

321 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
conjugal transfer protein trbeXF_RS12295Not Available-23298 - 235519112.12
trypsin-like serine peptidaseXF_RS12300Not Available-23811 - 2483037968.5
alpha/beta fold hydrolaseXF_RS12305Not Available-25191 - 2594627098.5
conjugal transfer protein trbeXF_RS12310Not Available-26116 - 262384535.54
type ii toxin-antitoxin system rele/pare family toxinXF_RS12315Not Available+26349 - 2673514171.1
conjugal transfer protein trbeXF_RS12320Not Available+26716 - 2705312034.3
conjugal transfer protein trbnXF_RS12325Not Available-27208 - 2780722281.4
p-type conjugative transfer protein trblXF_RS12330Not Available-27813 - 2918946307.2
eexn family lipoproteinXF_RS12335Not Available-29211 - 294478909.7
p-type conjugative transfer protein trbjXF_RS12340Not Available-29464 - 3023727990.2

Displaying genes 31 – 40 of 2537 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

97 records
Metabolite IDMetabolite nameStructureCAS number
BASm0019931N-Acetylglutamic acidC7H11NO5Chemical structure of N-Acetylglutamic acid1188-37-0
Average189.1659Da
Monoisotopic189.063722467Da
BASm00199645-(methylsulfanyl)-2,3-dioxopentyl phosphateC6H11O6PSChemical structure of 5-(methylsulfanyl)-2,3-dioxopentyl phosphateNULL
Average242.187Da
Monoisotopic242.001395286Da
BASm00199745-Methylthioribulose 1-phosphateC6H13O7PSChemical structure of 5-Methylthioribulose 1-phosphate86316-83-8
Average260.202Da
Monoisotopic260.011959972Da
BASm00200023-Dehydroshikimic acidC7H8O5Chemical structure of 3-Dehydroshikimic acid27655-56-7
Average172.1354Da
Monoisotopic172.037173366Da
BASm0020115(6R)-6-(l-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4a-hydroxypterinC9H14N4O3Chemical structure of (6R)-6-(l-erythro-1,2-dihydroxypropyl)-5,6,7,8-tetrahydro-4a-hydroxypterinNULL
Average226.2325Da
Monoisotopic226.106590334Da
BASm00346413-Methylthiopropionic acidC4H7O2SChemical structure of 3-Methylthiopropionic acidNULL
Average119.16Da
Monoisotopic119.017224219Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da

Displaying 91–97 of 97 metabolites