Paracoccus yeei

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei is a gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20–45°C). It is classified as a chemoheterotroph, deriving energy from organic compounds while also requiring organic substrates for growth. This microbe is primarily found in various environmental niches, including soil, water, and plant rhizospheres, where it plays a crucial role in nutrient cycling and organic matter decomposition. P. yeei is known to be a facultative anaerobe, capable of surviving in both aerobic and anaerobic conditions, which allows it to adapt to diverse habitats. The gram-negative nature of P. yeei indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural characteristic contributes to its resistance to certain antibiotics, making it an important subject of study in microbial resistance. Its rod shape, typical of many soil bacteria, enables efficient movement in various substrates, helping it to colonize and thrive in different environments. As a chemoheterotroph, P. yeei is involved in the degradation of complex organic matter, thus aiding in the recycling of nutrients necessary for plant growth. Its facultative anaerobic metabolism allows it to switch between aerobic respiration and fermentation, making it versatile in fluctuating oxygen conditions. P. yeei has garnered attention for its potential applications in bioremediation due to its ability to degrade environmental pollutants and its role in biogeochemical cycles. Research into its metabolic pathways might reveal novel enzymes that could be utilized in biotechnological processes, emphasizing its significance beyond environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paracoccus yeei

Accession NumberNZ_CP020444.2

Gene Summary

Adenine Count

35323 bp

Thymine Count

35270 bp

Guanine Count

59582 bp

Cytosine Count

58351 bp

Genome Length

188526 bp

Protein-coding Genes

185 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
class 1b ribonucleoside-diphosphate reductase subunit betaA6J80_RS15970Not Available-2755797 - 275676836793.5
class 1b ribonucleoside-diphosphate reductase subunit alphaA6J80_RS15975Not Available-2756866 - 275899280044.1
class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdiA6J80_RS15980Not Available-2758974 - 275940515528.8
glutaredoxin-like protein nrdhA6J80_RS15985Not Available-2759419 - 27596407861.47
nad(p)/fad-dependent oxidoreductaseA6J80_RS15990Not Available+2760092 - 276134846072.0
voc family proteinA6J80_RS15995Not Available+2761473 - 276190116246.4
marr family winged helix-turn-helix transcriptional regulatorA6J80_RS16000Not Available-2762126 - 276264719962.0
succinate dehydrogenase assembly factor 2A6J80_RS16005Not Available-2762738 - 276302210729.0
pyridoxal phosphate-dependent aminotransferaseA6J80_RS16010Not Available+2763099 - 276430142749.1
duf1127 domain-containing proteinA6J80_RS23680Not Available-2764306 - 27644465059.07

Displaying genes 2821 – 2830 of 3834 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites