Persephonella marina EX-H1

Gram-negativeRodNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Hydrogenothermaceae

Genus

Persephonella

Description

Persephonella marina (strain DSM 14350 / EX-H1) is a chemolithotrophic, thermophilic hydrogen-oxidizing bacterium isolated from a deep sea hydrothermal vent on the East Pacific Rise. P. marina has one chromosome and one megaplasmid. It is able to fix CO2 using the A-type reductive tricarboxylic acid (TCA) cycle. P. marina possesses genes to catalyze the oxidation of sulfide to elemental sulfur and is an autotrophic nitrate reducer. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyHydrogenothermaceae
GenusPersephonella
SpeciesPersephonella marina
StrainEX-H1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Persephonella marina EX-H1
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature73
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemolithoautotroph
PathogenicityNo

Genome Summary

Persephonella marina EX-H1

Accession NumberNC_012439.1

Gene Summary

Adenine Count

16255 bp

Thymine Count

18987 bp

Guanine Count

8391 bp

Cytosine Count

10049 bp

Genome Length

53682 bp

Protein-coding Genes

68 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tyrosine-type recombinase/integrasePERMA_RS10135Not Available-7112 - 801135351.1
hypothetical proteinPERMA_RS10140Not Available-8008 - 848419065.9
hypothetical proteinPERMA_RS10145Not Available-8497 - 961244412.8
hypothetical proteinPERMA_RS10150Not Available-9609 - 98248166.97
zeta toxin family proteinPERMA_RS10155Not Available-9817 - 1035620746.2
hypothetical proteinPERMA_RS10160Not Available-10457 - 1087316213.8
hypothetical proteinPERMA_RS10165Not Available-10885 - 1119912686.5
conjugal transfer protein tranPERMA_RS10170Not Available-11386 - 1394493902.5
hypothetical proteinPERMA_RS10175Not Available-13923 - 1481333108.5
hypothetical proteinPERMA_RS10180Not Available-14776 - 1533920703.6

Displaying genes 11 – 20 of 2096 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites