Synechococcus sp. CC9605

Gram-negativeCocciNon-motileFacultative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Marine unicellular cyanobacteria of the synechococcus group occupy an important position at the base of the marine food chain. They are abundant in the world's oceans and as a result are one of the most numerous genomes on earth. They have the ability to acquire major nutrients and trace metals from the submicromolar concentrations found in the oligotrophic open seas and their light-harvesting apparatus is uniquely adapted to the spectral quality of light in the ocean.A third of the open ocean isolates of synechococcus possess a unique type of swimming motility not seen in any other type of microorganism, they propel themselves through seawater at speeds of up to 25 mm/sec despite their lack of external propelling devices. They do not use their motility to respond to light gradients, but instead to respond to extremely small gradients of nitrogenous compounds.Synechococcus sp. strain WH8102 is a motile strain that can be grown in both natural and artificial seawater liquid media as well as on plates and is amenable to biochemical and genetic manipulation. The availability of the complete sequence of the genome of synechococcus WH8102 will provide insights not only into the unique adaptations of this cyanobacterial group to the marine environment, including mechanisms of nutrient and metal transport, chemotaxis, motility, and viral interactions but also into what factors might be ultimately important in controlling primary productivity in the oceans.Marine synechococcus spp. coexist with the other abundant unicellular marine cyanobacterial group, prochlorococcus . A major difference between the synechococcus and prochlorococcus groups lies in their light-harvesting apparatus, with synechococcus utilizing chlorophyll A, and prochlorococcus relying on divinyl chlorophylls A and B. A comparative analysis of their genomes should allow insights not only into the evolution of light-harvesting complexes, but also into cyanobacterial diversification in the oceans, including adaptations to different marine niches.Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. CC9605
StrainCC9605

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Synechococcus sp. CC9605
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNo

Genome Summary

Synechococcus sp. CC9605

Accession NumberNC_007516.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2792 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna polymerase iii subunit betaSYNCC9605_RS00015Not Available+231 - 138841167.9
hypothetical proteinSYNCC9605_RS00020Not Available+1390 - 214528516.5
phosphoribosylformylglycinamidine synthase subunit purlSYNCC9605_RS00025Not Available+2186 - 449280335.7
amidophosphoribosyltransferaseSYNCC9605_RS00030Not Available+4554 - 601154124.4
dna gyrase/topoisomerase iv subunit aSYNCC9605_RS00035Not Available-6019 - 848790039.3
tetratricopeptide repeat proteinSYNCC9605_RS00040Not Available-8533 - 939631816.2
trna epoxyqueuosine(34) reductase quegSYNCC9605_RS00045Not Available-9434 - 1039936456.4
hpsj family proteinSYNCC9605_RS00050Not Available+10436 - 1108322721.9
duf502 domain-containing proteinSYNCC9605_RS00055Not Available+11134 - 1186826803.0
transcription antitermination factor nusbSYNCC9605_RS00060Not Available+11872 - 1250723578.1

Displaying genes 1 – 10 of 2847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

66 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003116all-trans-undecaprenyl diphosphateC55H89O7P2Chemical structure of all-trans-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.6099999Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm0003335L-glutamyl 5-phosphateC5H8NO7PChemical structure of L-glutamyl 5-phosphateNot available
Average225.094Da
Monoisotopic225.0049358Da

Displaying 11–20 of 66 metabolites