Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae str. 70dps-OG12
Accession NumberVANF00000000.1
Gene Summary
Adenine Count
1421183 bp
Thymine Count
1422141 bp
Guanine Count
969435 bp
Cytosine Count
965266 bp
Genome Length
4778025 bp
Protein-coding Genes
4156 genes
Non-Coding Genes
50 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | FD720_02125 | Not Available | - | 438812 - 439618 | 28419.4 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | FD720_02130 | Not Available | - | 439694 - 440641 | 34868.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | FD720_02135 | Not Available | - | 440655 - 441089 | 15524.5 |
| lipoprotein signal peptidase | FD720_02140 | Not Available | - | 441198 - 441698 | 18667.9 |
| isoleucine--trna ligase | FD720_02145 | Not Available | - | 441698 - 444538 | 105816.0 |
| bifunctional riboflavin kinase/fad synthetase | FD720_02150 | Not Available | - | 444544 - 445506 | 35908.6 |
| murein biosynthesis integral membrane protein murj | FD720_02155 | Not Available | - | 445588 - 447147 | 56700.3 |
| 30s ribosomal protein s20 | FD720_02160 | Not Available | + | 447358 - 447618 | 9677.15 |
| winged helix-turn-helix transcriptional regulator | FD720_02165 | Not Available | - | 447709 - 448011 | 11416.0 |
| transcriptional activator nhar | FD720_02170 | Not Available | - | 448109 - 448996 | 34110.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.