Pseudomonas alabamensis

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas alabamensis is a Gram-negative, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This species is primarily found in soil environments, where it plays a role in the decomposition of organic matter, contributing to nutrient cycling within terrestrial ecosystems. As an obligate aerobe, Pseudomonas alabamensis requires oxygen for its metabolic processes, which further highlights its adaptation to aerobic habitats. The rod shape of Pseudomonas alabamensis is characteristic of many members of the Pseudomonas genus, facilitating motility and colonization in its soil habitat. The bacterium's ability to thrive in diverse soil conditions underscores its potential ecological versatility. While specific interactions with other soil microorganisms and plants have not been detailed, the presence of Pseudomonas alabamensis in soil suggests it may engage in complex ecological interactions that could influence soil health and fertility. In summary, Pseudomonas alabamensis exemplifies the diverse metabolic capabilities of soil-dwelling bacteria, contributing to ecological processes such as organic matter breakdown and nutrient availability, which are vital for sustaining soil ecosystems and promoting plant growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas alabamensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pseudomonas alabamensis
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas alabamensis

Accession NumberNZ_CP013997.1

Gene Summary

Adenine Count

838535 bp

Thymine Count

841836 bp

Guanine Count

1523153 bp

Cytosine Count

1510835 bp

Genome Length

4714359 bp

Protein-coding Genes

3976 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
protease modulator hflcAPT63_RS17810P44545-4159014 - 415988332845.2
ftsh protease activity modulator hflkAPT63_RS17815P40605-4159883 - 416106143575.1
ribosome rescue gtpase hflxAPT63_RS17820P25519-4161158 - 416245948819.4
rna chaperone hfqAPT63_RS17825A5W9T0-4162472 - 41627329394.33
trna (adenosine(37)-n6)-dimethylallyltransferase miaaAPT63_RS17830A5W9T1-4162826 - 416378835235.5
dna mismatch repair endonuclease mutlAPT63_RS17835Q88DD1-4163790 - 416570069479.1
n-acetylmuramoyl-l-alanine amidaseAPT63_RS17840P63884-4165700 - 416716351533.9
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeAPT63_RS17845P0AF68-4167164 - 416763716908.1
nad(p)h-hydrate dehydrataseAPT63_RS17850Q83CM5-4167625 - 416848528975.2
trna epoxyqueuosine(34) reductase quegAPT63_RS17855Q9HUL4+4168551 - 416961239405.3

Displaying genes 3661 – 3670 of 4121 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

593 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 593 metabolites